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| Browse the [[https://git.sagemath.org/sage.git/tree/build/pkgs|Git]] to see all of the included spkgs. (see below) | Browse the [[https://git.sagemath.org/sage.git/tree/build/pkgs|Git repo]] to see all of the included spkgs. (see "what is a spkg?" below) |
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| = Questions, didn't see (or didn't check) in spkg list as of Jan 2017) = * 4ti2 = Standard SPKGs = ||'''Spkg ''' ||'''Current spkg Maintainer(s)''' ||'''Version in Sage''' ||'''Latest Stable Release''' || || [[spkg/atlas|atlas]] || Josh Kantor || 3.8.3.p14 || 3.9.23 || || [[spkg/BLAS|BLAS]] || Josh Kantor, William Stein || || || || [[spkg/boehmgc|Boehm garbage collector]] || N/A || 7.1.p6 || 7.1 || || [[spkg/bzip2|bzip2]] || || || || || [[spkg/cddlib|Cddlib]] || William Stein || 094b.p3 || 094b || || [[spkg/clisp|clisp]] || William Stein || 2.46.p7 || 2.46 || || [[spkg/ConwayPolynomials|Conway Polynomials]] || William Stein || ? || ? || || [[spkg/Cvxopt|Cvxopt]] || William Stein, Josh Kantor || 0.9.p7 || 0.9 || || [[spkg/Cython|Cython]] || Robert Bradshaw || 0.12.1 || ? || || [[spkg/docutils|docutils]] || Mike Hansen || 0.5 || 0.5 || || [[spkg/ECM|ECM]] || N/A || 6.2.1.p2 || 6.3 || || [[spkg/eclib|eclib]] || John Cremona, [[WilliamStein|William Stein]], Ralph Philip Weinmann || 20080310.p7 || 20080310|| || [[spkg/elliptic_curves|elliptic_curves]] || || || || || [[spkg/examples|examples]] || || || || || [[spkg/extcode|extcode]] || || || || || [[spkg/f2c|f2c]] || || || || || [[spkg/flint|flint]] || Burcin Erocal, William Stein || 1.5.0.p5 || 1.5.2/1.6 incompatible: 2.2 || || [[spkg/flintqs|flintqs]] || ? || 20070817.p5 || ? || || [[spkg/fortran|fortran]] || ? || 20100629 || N/A || || [[spkg/freetype|freetype]] || William Stein || 2.3.5.p0 || 2.3.5 || || [[spkg/gap|gap]] || David Joyner, Robert Miller, [[WilliamStein|William Stein]] || 4.4.10.p10 || 4.4.10 || || [[spkg/gd|gd]] || N/A || 2.0.35.p0 || 2.0.35|| || [[spkg/gdmodule|gdmodule]] || ? || 0.56.p7 || ? || || [[spkg/genus2reduction|genus2reduction]] || William Stein || 0.3.p6 || 0.3? || || [[spkg/gfan|gfan]] || Marshall Hampton, William Stein || 0.3.p4 || 0.3 || || [[spkg/ghmm|ghmm]] || William Stein || 20080803 || 20080803 || || [[spkg/givaro|givaro]] || Clement Pernet, [[MartinAlbrecht|Martin Albrecht]] || 3.2.13rc1 || 3.2.12.rc1 || || [[spkg/glpk|glpk]] || ? || 4.44 || >=4.44 || || [[spkg/gmp|gmp]] || || (optional; see MPIR) || 5.0.2 || || [[spkg/gnutls|gnutls]] || || || || || [[spkg/graphs|graphs]] || || || || || [[spkg/gsl|gsl]] || William Stein || 1.14 || 1.14 || || [[spkg/iml|iml]] || [[WilliamStein|William Stein]], [[MartinAlbrecht|Martin Albrecht]] || 1.0.1.p11 || 1.0.3 || || [[spkg/ipython|ipython]] || Mike Hansen || 0.8.4.p0 || 0.10 || || [[spkg/jinja|jinja]] || Mike Hansen || 1.2 || 1.2 || || [[spkg/jmol|jmol]] || Josh Kantor, William Stein, Ted Kosan, Jonathan Gutow || 12.3.27 || 12.2.X || || [[spkg/lapack|lapack]] || || || || || [[spkg/lcalc|lcalc]] || Rishikesh || 20100428-1.23.p1 || 1.23 || || [[spkg/libfplll|libfplll]] || [[MartinAlbrecht|Martin Albrecht]] || 2.1.6-20071129.p5 || 2.1.6 || || [[spkg/libgcrypt|libgcrypt]] || N/A || 1.4.0.p2 || 1.4.0 || || [[spkg/libgpg_error|libgpg_error]] || N/A || 1.6 || 1.6 || || [[spkg/libm4ri|libm4ri]] || [[MartinAlbrecht|Martin Albrecht]] || 20100701.p1 || 20100701 || || [[spkg/libpng|libpng]] || N/A || 1.2.35.p2 || ? || || [[spkg/linbox|linbox]] || Clement Pernet, [[WilliamStein|William Stein]] || 1.1.6 || 1.1.6 || || [[spkg/matplotlib|matplotlib]] || Jason Grout || 0.98.3.p4 || 0.99.1.1 || || [[skpg/maxima|maxima]] || [[WilliamStein|William Stein]] || 5.16.3 || 5.18.1 || || [[spkg/mercurial|mercurial]] || William Stein || 1.3.1.p2 || 1.6.3 || || [[spkg/moinmoin|moinmoin]] || Mike Hansen, William Stein || 1.5.7.p2 || 1.5.7 || || [[spkg/mpfi|mpfi]] || Carl Witty || 1.3.4-cvs20071125.p7 || 1.3.4-cvs20071125 || || [[spkg/mpfr|mpfr]] || N/A || 2.4.2 || 3.0.1 || || [[spkg/mpir|mpir]] || ? || 1.2.2.p1 || 2.4.0 || || [[spkg/networkx|networkx]] || Robert Miller || 1.2.p1 || ? || || [[spkg/ntl|ntl]] || [[WilliamStein|William Stein]] || 5.4.2.p12 || 5.5.2 || || [[spkg/numpy|numpy]] || Jason Grout, Josh Kantor|| 1.2.0.p0 || 1.2.0 || || [[spkg/opencdk|opencdk]] || N/A || 0.6.6 || 0.6.6 || || [[spkg/palp|palp]] || N/A || 1.1.p1 || 1.1 || || [[spkg/pari|pari]] || [[WilliamStein|William Stein]], Craig Citro, Jeroen Demeyer || 2.4.3.alpha.p5 || 2.3.5? || || [[spkg/pexpect|pexpect]] || William Stein || 2.0.p1 || 2.0 || || [[spkg/polybori|polybori]] || Burcin Erocal || 0.6.4.p4 || ? || || [[spkg/pycrypto|pycrypto]] || N/A || 2.0.1.p2 || 2.0.1 || || [[spkg/pygments|pygments]] || Mike Hansen || 0.11.1 || 0.11.1 || || [[spkg/pynac|pynac]] || William Stein, Burcin Erocal || 0.2.0.p5 || ? || || [[spkg/pyprocessing|pyprocessing]] || William Stein, Mike Hansen, Tom Boothby || ? || ? || || [[spkg/python|python]] || [[WilliamStein|William Stein]] || 2.6.4.p9 || 2.7.x || || [[spkg/python_gnutls|python_gnutls]] || N/A || 1.1.4.p3 || 1.1.4 || || [[spkg/quaddouble|quaddouble]] || N/A || 2.2.p9 || 2.2 || || [[spkg/r|r]] || [[WilliamStein|William Stein]] || 2.10.1.p3 || ? || || [[spkg/readline|readline]] || N/A || 6.0.p2 || >=6.1 || || [[spkg/rpy|rpy]] || || || || || [[spkg/rubiks|rubiks]] || Robert Bradshaw || 20070912.p8 || 20070912 || || [[spkg/sage|sage]] || || || || || [[spkg/sage_scripts|sage_scripts]] || || || || || [[spkg/scipy|scipy]] || Josh Kantor, William Stein || scipy-20071020-0.6.p4 || 0.7.1 || || [[spkg/scipy_sandbox|scipy_sandbox]] || Josh Kantor || 20071020.p3 || 20071020 || || [[spkg/scons|scons]] || N/A || scons-0.97.0d20071212 || scons-0.97.0d20071212 || || [[spkg/setuptools|setuptools]] || Jaap Spies || 0.6c8.p1 || 0.6c8 || || [[spkg/singular|singular]] || [[MartinAlbrecht|Martin Albrecht]] || 3-1-1-4.p0 || >=3-1-1-4 || || [[spkg/sqlalchemy|sqlalchemy]] || Yi Qiang || 0.4.6.p0 || 0.4.6 || || [[spkg/sqlite|sqlite]] || N/A || 3.5.3.p3 || 3.5.3 || || [[spkg/sphinx|Sphinx]] || Mike Hansen || 0.6.3.p4 || ? || || [[spkg/symmetrica|symmetrica]] || Mike Hansen || 2.0.p2 || 2.0 || || [[spkg/sympow|sympow]] || William Stein || 1.018.1.p6 || 1.018.1 || || [[spkg/SymPy|SymPy]] || [[OndrejCertik|Ondřej Čertík]] || 0.6.3.p0 || 0.6.6 || || [[spkg/tachyon|tachyon]] || William Stein || 0.98beta.p11 || 0.98.9(!) || || [[spkg/termcap|termcap]] || William Stein || 1.3.1.p0 || 1.3.1 || || [[spkg/twisted|twisted]] || Mike Hansen || 8.1.0.p1 || 8.1.0 || || [[spkg/weave|weave]] || || || || || [[spkg/zlib|zlib]] || N/A || 1.2.3.p4 || 1.2.3 || || [[spkg/zn_poly|zn_poly]] || David Harvey || 0.9.p0 || 0.9 || || [[spkg/zodb|zodb]] || N/A || 3.7.0.p4 || 3.7.0 || == Optional SPKGs == ||'''Spkg ''' ||'''Current spkg Maintainer(s)''' ||'''Version in Sage''' ||'''Latest Stable Release''' || ||[[spkg/biopython|biopython]] || Marshall Hampton || 1.49b || 1.51 || ||[[spkg/fricas|fricas]] || Ralf Hemmecke || 1.0.8 || 1.0.8 || ||[[spkg/knoboo|knoboo]] || William Stein || knoboo-20080411 || knoboo-20080411 || ||[[spkg/lrs|lrs]] || Marshall Hampton || 1.44 || 1.45 || ||[[spkg/phcpack|phcpack]] || Marshall Hampton || 2.3.39.p0 || 2.3.39 || == SPKGs no longer standard == |
= SPKGs = Update this table based on [[git.sagemath.org]]. ||'''Spkg''' ||'''Upstream Weblink''' ||'''Version in Sage (Released)''' ||'''Purpose''' ||'''Standard?''' || ||[[spkg/4ti2]] ||[[http://www.4ti2.de/]] ||1.6.5 (May 2015) ||A software package for algebraic, geometric, combinatoric problems on linear spaces ||Optional || ||[[spkg/alabaster]] ||[[http://alabaster.readthedocs.io/]] ||0.7.8.p0 (May 2016) ||Default theme for Sphinx ||Standard || ||[[spkg/appnope]] ||[[https://github.com/minrk/appnope]] ||0.1.0.p0 (Oct 2014) ||Disables App Nap on OSX 10.9 ||Standard || ||[[spkg/arb]] ||[[arblib.org/]] [[github.com/fredrik-johansson/arb/]]||2.8.1.p1 (Dec 2015) ||C library for arbitrary-precision interval arithmetic ||Standard || ||[[spkg/atlas]] ||[[http://math-atlas.sourceforge.net/]] ||(AUTO UPDATES PER INSTALL) ||Linear Algebra (packages) ||Optional || ||[[spkg/autotools]] ||[[https://www.gnu.org/software/automake/]] ||(AUTO UPDATES PER INSTALL) ||GNU Build System ||Optional || ||[[spkg/babel]] ||[[http://babel.pocoo.org/]] ||2.3.4.p0 (no idea, but if so, REALLY OLD)||Internationalization utilities ||Standard || ||[[spkg/backports_abc]] ||[[https://pypi.python.org/pypi/backports_abc]] ||0.5 (Nov 2016) || Backports "collections.abc" (PyPi) ||Standard || ||[[spkg/backports_shutil_get_terminal_size]] || PyPi || 1.0.0.p1 (Aug 2014)|| A backport of the get_terminal_size function from Python 3.3's shutil. ||Standard || ||[[spkg/backports_ssl_match_hostname]] || PyPi || 3.5.0.1.p0 (Dec 2015) || The ssl.match_hostname() function from Python 3.5 || Standard || ||[[spkg/beautifulsoup]] || [[https://www.crummy.com/software/BeautifulSoup/]] || ? || Screen-scraping library (sits atop html/xml parser) || "pip" || ||[[spkg/benzene]] || ? Assuming http://www.grinvin.org/ || 20130630 (Jun 2013?) || efficient generation of all nonisomorphic fusenes and benzenoids || Optional || ||[[spkg/biopython]] || [[http://biopython.org/]] || ? || Python tools for computational molecular biology || "pip" || ||[[spkg/bliss]]|| [[www.tcs.tkk.fi/Software/bliss]]|| auto [[github.com/mkoeppe/bliss]] ||computing automorphism groups and canonical forms of graphs || Optional || ||[[spkg/boost]]|| [[http://www.boost.org/]]|| 1.61.0 (May 2016) || "portable C++ Libraries" || Optional|| ||[[spkg/boost_cropped]]|| Same as above || 1.58.0? ... includes spkg-src || ? || Standard|| ||[[spkg/brial]]|| [[https://github.com/BRiAl/BRiAl]] || 0.8.5 (June 2016) || various; successor to PolyBoRi || Standard || ||[[spkg/brian]]|| [[https://pypi.python.org/pypi/brian]] [[http://briansimulator.org/]] || ? || A clock-driven simulator for spiking neural networks || "pip" || ||[[spkg/buckygen]]|| [[http://caagt.ugent.be/buckygen/]] || 1.0 (Sept 2014) || efficient generation of all nonisomorphic fullerenes || Optional ("specialized") || ||[[spkg/bzip2]]|| [[http://www.bzip.org/]] || (AUTO UPDATES) || data compressor || Standard|| |
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| == What is a spkg? == | = What is a spkg? = |
Browse the Git repo to see all of the included spkgs. (see "what is a spkg?" below)
Trac (the wiki) provides minimal information in regards to "dependencies" (upstream).
The Sage Developer Guide includes some information on including packages into the source code.
Edit the table's contents to reflect packages included.
SPKGs
Update this table based on git.sagemath.org.
Spkg |
Upstream Weblink |
Version in Sage (Released) |
Purpose |
Standard? |
1.6.5 (May 2015) |
A software package for algebraic, geometric, combinatoric problems on linear spaces |
Optional |
||
0.7.8.p0 (May 2016) |
Default theme for Sphinx |
Standard |
||
0.1.0.p0 (Oct 2014) |
Disables App Nap on OSX 10.9 |
Standard |
||
2.8.1.p1 (Dec 2015) |
C library for arbitrary-precision interval arithmetic |
Standard |
||
(AUTO UPDATES PER INSTALL) |
Linear Algebra (packages) |
Optional |
||
(AUTO UPDATES PER INSTALL) |
GNU Build System |
Optional |
||
2.3.4.p0 (no idea, but if so, REALLY OLD) |
Internationalization utilities |
Standard |
||
0.5 (Nov 2016) |
Backports "collections.abc" (PyPi) |
Standard |
||
1.0.0.p1 (Aug 2014) |
A backport of the get_terminal_size function from Python 3.3's shutil. |
Standard |
||
3.5.0.1.p0 (Dec 2015) |
The ssl.match_hostname() function from Python 3.5 |
Standard |
||
? |
Screen-scraping library (sits atop html/xml parser) |
"pip" |
||
? Assuming http://www.grinvin.org/ |
20130630 (Jun 2013?) |
efficient generation of all nonisomorphic fusenes and benzenoids |
Optional |
|
? |
Python tools for computational molecular biology |
"pip" |
||
computing automorphism groups and canonical forms of graphs |
Optional |
|||
1.61.0 (May 2016) |
"portable C++ Libraries" |
Optional |
||
Same as above |
1.58.0? ... includes spkg-src |
? |
Standard |
|
0.8.5 (June 2016) |
various; successor to PolyBoRi |
Standard |
||
https://pypi.python.org/pypi/brian http://briansimulator.org/ |
? |
A clock-driven simulator for spiking neural networks |
"pip" |
|
1.0 (Sept 2014) |
efficient generation of all nonisomorphic fullerenes |
Optional ("specialized") |
||
(AUTO UPDATES) |
data compressor |
Standard |
Spkg |
Current spkg Maintainer(s) |
Version in Sage |
Latest Stable Release |
Removed In |
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Sage 3.3 |
What is a spkg?
Files with the extension ".spkg" are known as Sage packages. The directory SAGE_ROOT/spkg/standard contains the standard SPKG's. In a source install of Sage, this directory contains all the standard Sage spkg files (actually .tar or .tar.bz2 files), which are the source code that defines Sage. In a binary install, some of these may be small placeholder files to save space.
Sage packages are distributed as ".spkg" files, which are .tar.bz2 files (or tar files) but have the extension ".spkg" to discourage confusion. Although Sage packages are packed using tar and/or bzip2, please note that ".spkg" files contain control information (installation scripts and metadata) that are necessary for building and installing them. For source distributions, when you compile Sage the file SAGE_ROOT/makefile takes care of the unpacking, compilation, and installation of Sage packages for you. For more information on the structure of .spkg files, please refer to the Sage Developer's Guide in your local installation of Sage at
SAGE_ROOT/sage/doc/output/html/en/developer/index.html
If you cannot locate that file in your local installation of Sage, you might want to consider (re)building the standard Sage documentation using this command:
SAGE_ROOT/sage -docbuild all html
or refer to the online Sage developer's guide. Additional Sage packages can be found at the packages download page.