Differences between revisions 2 and 5 (spanning 3 versions)

Browse the Git repo to see all of the included spkgs. (see "what is a spkg?" below)

Trac (the wiki) provides minimal information in regards to "dependencies" (upstream).

The Sage Developer Guide includes some information on including packages into the source code.

Edit the table's contents to reflect packages included.

SPKGs

Update this table based on git.sagemath.org.

Spkg	Upstream Weblink	Version in Sage (Released)	Purpose	Standard?
spkg/4ti2	http://www.4ti2.de/	1.6.5 (May 2015)	A software package for algebraic, geometric, combinatoric problems on linear spaces	Optional
spkg/alabaster	http://alabaster.readthedocs.io/	0.7.8.p0 (May 2016)	Default theme for Sphinx	Standard
spkg/appnope	https://github.com/minrk/appnope	0.1.0.p0 (Oct 2014)	Disables App Nap on OSX 10.9	Standard
spkg/arb	arblib.org/ github.com/fredrik-johansson/arb/	2.8.1.p1 (Dec 2015)	C library for arbitrary-precision interval arithmetic	Standard
spkg/atlas	http://math-atlas.sourceforge.net/	(AUTO UPDATES PER INSTALL)	Linear Algebra (packages)	Optional
spkg/autotools	https://www.gnu.org/software/automake/	(AUTO UPDATES PER INSTALL)	GNU Build System	Optional
spkg/babel	http://babel.pocoo.org/	2.3.4.p0 (no idea, but if so, REALLY OLD)	Internationalization utilities	Standard
spkg/backports_abc	https://pypi.python.org/pypi/backports_abc	0.5 (Nov 2016)	Backports "collections.abc" (PyPi)	Standard
spkg/backports_shutil_get_terminal_size	PyPi	1.0.0.p1 (Aug 2014)	A backport of the get_terminal_size function from Python 3.3's shutil.	Standard
spkg/backports_ssl_match_hostname	PyPi	3.5.0.1.p0 (Dec 2015)	The ssl.match_hostname() function from Python 3.5	Standard
spkg/beautifulsoup	https://www.crummy.com/software/BeautifulSoup/	?	Screen-scraping library (sits atop html/xml parser)	"pip"
spkg/benzene	? Assuming http://www.grinvin.org/	20130630 (Jun 2013?)	efficient generation of all nonisomorphic fusenes and benzenoids	Optional
spkg/biopython	http://biopython.org/	?	Python tools for computational molecular biology	"pip"
spkg/bliss	www.tcs.tkk.fi/Software/bliss	auto github.com/mkoeppe/bliss	computing automorphism groups and canonical forms of graphs	Optional
spkg/boost	http://www.boost.org/	1.61.0 (May 2016)	"portable C++ Libraries"	Optional
spkg/boost_cropped	Same as above	1.58.0? ... includes spkg-src	?	Standard
spkg/brial	https://github.com/BRiAl/BRiAl	0.8.5 (June 2016)	various; successor to PolyBoRi	Standard
spkg/brian	https://pypi.python.org/pypi/brian http://briansimulator.org/	?	A clock-driven simulator for spiking neural networks	"pip"
spkg/buckygen	http://caagt.ugent.be/buckygen/	1.0 (Sept 2014)	efficient generation of all nonisomorphic fullerenes	Optional ("specialized")
spkg/bzip2	http://www.bzip.org/	(AUTO UPDATES)	data compressor	Standard

Spkg	Current spkg Maintainer(s)	Version in Sage	Latest Stable Release	Removed In
pysqlite
ipython1				Sage 3.3

What is a spkg?

Files with the extension ".spkg" are known as Sage packages. The directory SAGE_ROOT/spkg/standard contains the standard SPKG's. In a source install of Sage, this directory contains all the standard Sage spkg files (actually .tar or .tar.bz2 files), which are the source code that defines Sage. In a binary install, some of these may be small placeholder files to save space.

Sage packages are distributed as ".spkg" files, which are .tar.bz2 files (or tar files) but have the extension ".spkg" to discourage confusion. Although Sage packages are packed using tar and/or bzip2, please note that ".spkg" files contain control information (installation scripts and metadata) that are necessary for building and installing them. For source distributions, when you compile Sage the file SAGE_ROOT/makefile takes care of the unpacking, compilation, and installation of Sage packages for you. For more information on the structure of .spkg files, please refer to the Sage Developer's Guide in your local installation of Sage at

SAGE_ROOT/sage/doc/output/html/en/developer/index.html

If you cannot locate that file in your local installation of Sage, you might want to consider (re)building the standard Sage documentation using this command:

SAGE_ROOT/sage -docbuild all html

or refer to the online Sage developer's guide. Additional Sage packages can be found at the packages download page.

-  ⇤ ← Revision 2 as of 2017-02-02 01:27:54 → 
  Size: 0
  Editor: mrennekamp
  Comment: now under https://wiki.sagemath.org/Sage_Spkg_Tracking
+   ← Revision 5 as of 2017-02-05 22:04:58 → ⇥
  Size: 5209
  Editor: mrennekamp
  Comment: a-b spkg's listed in https://git.sagemath.org/sage.git/tree/build/pkgs
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+Browse the [[https://git.sagemath.org/sage.git/tree/build/pkgs|Git repo]] to see all of the included spkgs. (see "what is a spkg?" below)

[[https://trac.sagemath.org/|Trac]] (the wiki) provides minimal information in regards to "dependencies" (upstream).

The Sage [[http://doc.sagemath.org/html/en/developer/index.html|Developer Guide]] includes some information on including packages into the source code.

Edit the table's contents to reflect packages included.

= SPKGs =
Update this table based on [[git.sagemath.org]].
||'''Spkg''' ||'''Upstream Weblink''' ||'''Version in Sage (Released)''' ||'''Purpose''' ||'''Standard?''' ||
||[[spkg/4ti2]] ||[[http://www.4ti2.de/]] ||1.6.5 (May 2015) ||A software package for algebraic, geometric, combinatoric problems on linear spaces ||Optional ||
||[[spkg/alabaster]] ||[[http://alabaster.readthedocs.io/]] ||0.7.8.p0 (May 2016) ||Default theme for Sphinx ||Standard ||
||[[spkg/appnope]] ||[[https://github.com/minrk/appnope]] ||0.1.0.p0 (Oct 2014) ||Disables App Nap on OSX 10.9 ||Standard ||
||[[spkg/arb]] ||[[arblib.org/]] [[github.com/fredrik-johansson/arb/]]||2.8.1.p1 (Dec 2015) ||C library for arbitrary-precision interval arithmetic ||Standard ||
||[[spkg/atlas]] ||[[http://math-atlas.sourceforge.net/]] ||(AUTO UPDATES PER INSTALL) ||Linear Algebra (packages) ||Optional ||
||[[spkg/autotools]] ||[[https://www.gnu.org/software/automake/]] ||(AUTO UPDATES PER INSTALL) ||GNU Build System ||Optional ||
||[[spkg/babel]] ||[[http://babel.pocoo.org/]] ||2.3.4.p0 (no idea, but if so, REALLY OLD)||Internationalization utilities ||Standard ||
||[[spkg/backports_abc]] ||[[https://pypi.python.org/pypi/backports_abc]] ||0.5 (Nov 2016) || Backports "collections.abc" (PyPi) ||Standard ||
||[[spkg/backports_shutil_get_terminal_size]] || PyPi || 1.0.0.p1 (Aug 2014)|| A backport of the get_terminal_size function from Python 3.3's shutil. ||Standard ||
||[[spkg/backports_ssl_match_hostname]] || PyPi || 3.5.0.1.p0 (Dec 2015) || The ssl.match_hostname() function from Python 3.5 || Standard ||
||[[spkg/beautifulsoup]] || [[https://www.crummy.com/software/BeautifulSoup/]]  || ? || Screen-scraping library (sits atop html/xml parser) || "pip" ||
||[[spkg/benzene]] || ? Assuming http://www.grinvin.org/ || 20130630 (Jun 2013?) || efficient generation of all nonisomorphic fusenes and benzenoids || Optional ||
||[[spkg/biopython]] || [[http://biopython.org/]] || ? || Python tools for computational molecular biology || "pip" ||
||[[spkg/bliss]]|| [[www.tcs.tkk.fi/Software/bliss]]|| auto [[github.com/mkoeppe/bliss]] ||computing automorphism groups and canonical forms of graphs || Optional ||
||[[spkg/boost]]|| [[http://www.boost.org/]]|| 1.61.0 (May 2016) || "portable C++ Libraries" || Optional||
||[[spkg/boost_cropped]]|| Same as above || 1.58.0? ... includes spkg-src || ? || Standard||
||[[spkg/brial]]|| [[https://github.com/BRiAl/BRiAl]] || 0.8.5 (June 2016) || various; successor to PolyBoRi || Standard ||
||[[spkg/brian]]|| [[https://pypi.python.org/pypi/brian]] [[http://briansimulator.org/]] || ? || A clock-driven simulator for spiking neural networks || "pip" ||
||[[spkg/buckygen]]|| [[http://caagt.ugent.be/buckygen/]] || 1.0 (Sept 2014) || efficient generation of all nonisomorphic fullerenes || Optional ("specialized") ||
||[[spkg/bzip2]]|| [[http://www.bzip.org/]] || (AUTO UPDATES) || data compressor || Standard||

||'''Spkg   ''' ||'''Current spkg Maintainer(s)''' ||'''Version in Sage''' ||'''Latest Stable Release''' ||'''Removed In''' ||
|| [[spkg/pysqlite|pysqlite]] || || || || ||
|| [[spkg/ipython1|ipython1]] || || || || Sage 3.3 ||

= What is a spkg? =

Files with the extension ".spkg" are known as Sage packages. The directory {{{SAGE_ROOT/spkg/standard}}} contains the standard SPKG's. In a source install of Sage, this directory contains all the standard Sage spkg files (actually .tar or .tar.bz2 files), which are the source code that defines Sage. In a binary install, some of these may be small placeholder files to save space.

Sage packages are distributed as ".spkg" files, which are .tar.bz2 files (or tar files) but have the extension ".spkg" to discourage confusion. Although Sage packages are packed using tar and/or bzip2, please note that ".spkg" files contain control information (installation scripts and metadata) that are necessary for building and installing them. For source distributions, when you compile Sage the file {{{SAGE_ROOT/makefile}}} takes care of the unpacking, compilation, and installation of Sage packages for you. For more information on the structure of {{{.spkg}}} files, please refer to the Sage Developer's Guide
in your local installation of Sage at
{{{
SAGE_ROOT/sage/doc/output/html/en/developer/index.html
}}}
If you cannot locate that file in your local installation of Sage, you might want to consider (re)building the standard Sage documentation using this command:
{{{
SAGE_ROOT/sage -docbuild all html
}}}
or refer to the [[http://www.sagemath.org/doc/developer/|online Sage developer's guide]]. Additional Sage packages can be found at the [[http://www.sagemath.org/download-packages.html|packages download page]].

Diff for "spkg"

SPKGs

What is a spkg?