Spkg

Upstream Weblink

Includes a spkg-src? (NY = updates manually)

Purpose

Standard?

beautifulsoup

https://www.crummy.com/software/BeautifulSoup/

?

Screen-scraping library (sits atop html/xml parser)

"pip"

benzene

? Assuming http://www.grinvin.org/

NY

Efficient generation of all nonisomorphic fusenes and benzenoids

Optional

biopython

http://biopython.org/

?

Python tools for computational molecular biology

"pip"

bliss

http://www.tcs.tkk.fi/Software/bliss

(AUTO UPDATES)

Computing automorphism groups and canonical forms of graphs

Optional

boost

http://www.boost.org/

NY

"Portable C++ Libraries"

Optional

boost_cropped

Same as above

includes spkg-src

?

Standard

brial

https://github.com/BRiAl/BRiAl

NY

Various; successor to PolyBoRi

Standard

brian

https://pypi.python.org/pypi/brian http://briansimulator.org/

?

A clock-driven simulator for spiking neural networks

"pip"

buckygen

http://caagt.ugent.be/buckygen/

NY

Efficient generation of all nonisomorphic fullerenes

Optional

bzip2

http://www.bzip.org/

(AUTO UPDATES)

Data compressor

Standard

cbc

https://projects.coin-or.org/Cbc

NY

Open-source mixed integer programming solver written in C++

Optional

ccache

https://ccache.samba.org/

NY

Compiler cache; supports C, C++, Objective-C, and Objective-C++

Optional

cddlib

https://www.inf.ethz.ch/personal/fukudak/cdd_home/

(AUTO UPDATES)

C implementation of the Double Description Method of Motzkin

Standard

cephes

http://www.moshier.net/

NY

Mathematical library in/for C

Standard

certifi

http://certifi.io/

NY

Python package for providing Mozilla's CA Bundle

Standard

cliquier

https://users.aalto.fi/~pat/cliquer.html

(AUTO UPDATES)

Set of C routines for finding cliques in an arbitrary weighted graph

Standard

cmake

https://cmake.org/

NY

CMake is a cross-platform build system generator

Experimental

combinatoral_designs

?

NY

Data for combinatoral designs

Standard

compilerwrapper

https://bitbucket.org/vbraun/compilerwrapper

NY

A wrapper for compiler and binutils

Experimental

configparser

https://docs.python.org/3/library/configparser.html

NY

Exists for compatiblity with Python2

Standard

configure

Auto-generated by Sage

Auto-generated by Sage

shipped in case sufficiently recent autotools not installed

Base

conway_polynomials

extends Sage library

NY?

Small database of Conway Polynomials

Standard

coxeter3

http://math.univ-lyon1.fr/~ducloux/coxeter/coxeter3/english/coxeter3_e.html

NY

Wraps Fokko Ducloux's Coxeter 3 C++ library

Optional

cryptominisat

https://www.msoos.org/

NY

(To be) an efficient sequential, parallel and distributed solver

Experimental

csdp

https://projects.coin-or.org/Csdp

(AUTO UPDATES)

A fast SDP solver written in C

Optional

cvxopt

http://cvxopt.org/

NY

Convex optimization based on Python

Standard

cycler

http://matplotlib.org/cycler/

NY

A small break of of matplotlib to deal with "composable cycles"

Standard

cysignals

https://github.com/sagemath/cysignals

NY

Interrupt and signal handling for Cython

Standard

cython

http://cython.org/

NY

C extensions for Python

Standard

d3js

https://d3js.org/

(AUTO UPDATES)

JavaScript library for manipulating documents based on data

Optional

database_cremona_ellcurve

https://github.com/JohnCremona/ecdata

NY

John Cremona's database of elliptic curves

Optional

database_gap

https://www.gap-system.org/

(AUTO UPDATE)

The databases of GAP: finite groups and tables of marks

Optional

database_kohel

database_mutation_class

database_odlyzko_zeta

database_pari

database_stein_watkins

database_stein_watkins_mini

database_symbolic_data

dateutil

https://pypi.python.org/pypi/python-dateutil

NY

Extensions to Python dateutil

Standard

decorator

?

NY

"Better living through Python with decorators"

Standard

docutils

http://docutils.sourceforge.net/

NY

A modular system for processing documentation into useful formats, such as HTML, XML, and LaTeX.

Standard

doc2tex

https://pypi.python.org/pypi/dot2tex

NY

A Graphviz to LaTeX converter

Optional

ecl

https://common-lisp.net/project/ecl/

(AUTO UPDATES)

Implementation of the Common Lisp language

Standard

eclib

https://github.com/JohnCremona/eclib

NY

Enumerating and computing with elliptic curves defined over the rational numbers

Standard

ecm

http://gforge.inria.fr/projects/ecm/

NY

Elliptic Curve Method for Integer Factorization

Standard

elliptic_curves

NY

Two databases for elliptic curves, from John Cremona and William Stein

Standard

entrypoints

https://github.com/takluyver/entrypoints

NY, but also has special setup

Discover and load entry points from installed packages

Standard

fflas_ffpak

http://www.linalg.org/linbox/fflas-ffpack/

NY

Source code library for dense linear algebra over word-size finite fields

Standard

flask

http://flask.pocoo.org/

NY

Web micro-framework

Standard

flask_autoindex

?

NY

The mod_autoindex for Flask

Standard

flask_babel

?

NY

Adds i18n/l10n support to Flask applications

Standard

flask_oldsessions

?

NY

Provides a session class

Standard

flask_openid

?

NY

OpenID support for Flask

Standard

flask_silk

?

NY

Adds silk icons to your Flask application or blueprint, or extension

Standard

flint

http://www.flintlib.org/

NY

Fast Library for Number Theory

Standard

flintqs

http://www.friedspace.com/QS/

NY

Multi-polynomial quadratic sieve for integer factorization

Standard

fyplll

https://github.com/fplll/fpylll

NY

Python interface for fpll (Lattice algorithms using floating-point arithmetic)

Standard

freetype

https://www.freetype.org/

NY

Software library to render fonts

Standard

fricas

https://fricas.sourceforge.net/

NY

Advanced CAS

Experimental

frobby

http://www.broune.com/frobby/

NY

Provides a number of computations on monomial ideals

Optional

functools32

https://pypi.python.org/pypi/functools32

NY

Backport of the functools module from Python 3.2.3

Standard

future

https://pypi.python.org/pypi/future/

NY

future is the missing compatibility layer between Python 2 and Python 3

Standard