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| = OSX 64-bit = * Cython {{{ 20:58 < mabshoff> There is also a bug in the way Cython builds its extensions. 20:58 < mabshoff> It needs to use the flags python was build with, not some random stuff people thing 20:58 < mabshoff> think is good. 20:58 < mabshoff> I told Robert about it. But: [06:36] <mabshoff> But it doesn't match the python flags. I checked on it once. [06:37] <was_> It's distutils. [06:37] <was_> Cython doesn't have anything to do with the flags. }}} = Building Python 2.5.2 on OSX = ./configure --prefix=/Users/mabshoff/python-2.5.2-64 --with-gcc="gcc -m64" --enable-toolbox-glue=false make && make install works, but there are various error message from gcc since it fails to build the toolbox glue on OSX, despite the above command disabling it. = Build Order of packages for 2.10.alpha2 = * dir-0.1 - sources !solve! * prereq-0.3 - sources !solve! * sage_scripts-2.10.alpha2 - sources !solve! * bzip2-1.0.4 - 32 bit enough? !solve! * conway_polynomials-0.2 - database? !solve! * gmp-4.2.1.p12 - must be 64 bit !solve! * termcap-1.3.1 - must be 64 bit !solve! * readline-5.2.p0 - must be 64 bit !solve! * pari-2.3.3 - must be 64 bit !solve! * ntl-5.4.1.p10 - must be 64 bit !solve! * cremona-20071219.p1 - must be 64 bit !solve! * graphs-20070722 - sources? !solve! * elliptic_curves-0.1 - don't know !solve! * extcode-2.10.alpha2 - sources? !solve! * flint-1.05 - must be 64 bit !solve! * zlib-1.2.3.p3 - must be 64 bit !solve! * sqlite-3.5.3.p1 - must be 64 bit !solve! * libgpg_error-1.5 - must be 64 bit !solve! * libgcrypt-1.2.4 - must be 64 bit !solve! * opencdk-0.5.9 - must be 64 bit !solve! * gnutls-1.6.3 - must be 64 bit !solve! * libpng-1.2.22.p3 - must be 64 bit !solve! * python-2.5.1.p11 - must be 64 bit - see above * freetype-2.3.5 - must be 64 bit * gd-2.0.33.p5 - must be 64 bit - distutils (partially?) * gdmodule-0.56.p4 - must be 64 bit - distutils * fortran-20071120.p3 - must be 64 bit - build gcc 4.2.2 gfortran from source * lapack-20071123.p0 - must be 64 bit * atlas-3.8.p7 - skipped anyway * gsl-1.9 - must be 64 bit * iml-1.0.1.p8 - must be 64 bit * ipython-0.8.1.p1 - python? - distutils? * givaro-3.2.6.p5 - must be 64 bit * linbox-20070915.p3 - must be 64 bit * f2c-20070816 - must be 64 bit * blas-20070724 - must be 64 bit * numpy-20080104-1.0.4.p1 - must be 64 bit - distutils * matplotlib-0.91.1.p1 - must be 64 bit - distutils * mercurial-0.9.5.p0 - must be 64 bit * mpfr-2.3.0.p0 - integarted into mpfr-2.3.0.p1 * pexpect-2.0.p1 - must be 64 bit - distutils * mpfi-1.3.4-cvs20071125.p4 - must be 64 bit * pycrypto-2.0.1.p1 - python - distutils * cython-0.9.6.9 - python - distutils * sympy-0.5.7 - python - distutils * zodb3-3.7.0 - python only? - distutils * networkx-0.35.1 - pure python - distutils * quaddouble-2.2.p7 - must be 64 bit * python_gnutls-1.1.1 - python - distutils * twistedweb2-20070619 - python only? - distutils * twisted-2.5.0.p8 - python only? - distutils * singular-3-0-4-1-20071209.p3 - must be 64 bit * scons-0.97 - python only - distutils * symmetrica-2.0.p0 - must be 64 bit * libfplll-2.1.6-20071129 - must be 64 bit * polybori-0.1-r6 - must be 64 bit * rpy-1.0.1.p0 - must be 64 bit * r-2.6.1.p7 - must be 64 bit * rubiks-20070912.p0 - must be 64 bit * libm4ri-20071224 - must be 64 bit * sage-2.10.alpha2 - must be 64 bit * doc-2.10.alpha2 - doc * examples-2.10.alpha2 - doc * gap-4.4.10.p0 - 32 bit enough for now * clisp-2.41.p12 - 32 bit enough for now * maxima-5.13.0.p2 - 32 bit enough for now * genus2reduction-0.3 - depends on libpari, so needs to be 64 bits * lcalc-20070107.p0 - depends on libpari, so needs to be 64 bits * sympow-1.018.1.p3 - 32 bit enough for now * cddlib-094b.p0 - 32 bit enough for now * gfan-0.2.2.p2 - 32 bit enough for now * ecm-6.1.3 - 32 bit enough for now * tachyon-0.98beta.p3 - 32 bit enough for now * weave-0.4.9 - 32 bit enough for now * flintqs-20070817.p1 - 32 bit enough for now * palp-1.1 - 32 bit enough for now * moin-1.5.7.p2 - python * ipython1-20070130 - python * scipy-20071020-0.6.p2 - python only? * scipy_sandbox-20071020 - python only? * cvxopt-0.9.p5 - no clue * jmol-11.5.2 - java = Build Notes = Sage 2.10.alpha2 port to 64 bit OSX: == prereq-0.3 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then SAGE_OPT="-O2 -g -m64 " && export SAGE_OPT fi }}} More changes in spkg/base/bzip2-1.0.4-install == gmp-4.2.1.p12 == broken, need to update to 4.2.2, skip patching add ABI=64, otherwise set ABI=32 Maybe: Our gmp 4.2.1 is FUBAR, i.e. Cygwin problems Important: add extern __inline__ gmp-h.in fix for Darwin == termcap-1.3.1 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS="-O2 -g -m64 " && export CFLAGS fi }}} == readline-5.2.p0 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS="-O2 -g -m64 " && export CFLAGS fi }}} == pari-2.3.3 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS="-g -m64 " && export CFLAGS fi }}} With those settings: {{{ GP/PARI CALCULATOR Version 2.3.3 (released) i386 running darwin (x86-64/GMP kernel) 64-bit version compiled: Jan 13 2008, gcc-4.0.1 (Apple Inc. build 5465) (readline not compiled in, extended help available) }}} == cremona-20071219.p1 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel build" PICFLAG=-m64 export PICFLAG fi }}} OPTFLAG overwrites CC and CXX == flint-1.05 == spkg-install: {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" FLINT_TUNE=" -fPIC -m64" fi }}} In the dylib Darwin case: {{{ if ["$SAGE64" = "yes" ]; then $MAKE libflint.dylib64 else $MAKE libflint.dylib fi }}} in src/makefile add {{{ libflint.dylib64: $(FLINTOBJ) $(CC) -m64 -single_module -fPIC -dynamiclib -o libflint.dylib $(FLINTOBJ) $(LIBS) }}} spkg-check: {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" FLINT_TUNE=" -fPIC -m64" fi }}} == zlib-1.2.3.p3 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS=" -m64 $CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\"" else CFLAGS="$CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\"" fi export CFLAGS }}} == sqlite-3.5.3.p1 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == plibgpg_error-1.5 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == libgcrypt-1.2.4 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == opencdk-0.5.9 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == gnutls-1.6.3 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == libpng-1.2.22.p3 == if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS=" -m64 $CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\"" else CFLAGS="$CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\"" fi export CFLAGS }}} Note: gd-2.0.35 requires a dynamic libpng12.dylib == freetype-2.3.5 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS fi }}} == gd-2.0.33.p5 == Update to 2.0.35 {{{ # needed to pick up zlib.h if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then CFLAGS=" -m64 $CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\" -I$SAGE_LOCAL/include/freetype2/" else CFLAGS="$CFLAGS -fPIC -g -I\"$SAGE_LOCAL/include\" -I$SAGE_LOCAL/include/freetype2/" fi export CFLAGS }}} Makefile.am: add "-m64" == fortran-20071120.p3 == gfortran 4.2.2 compiled from scratch. Add "-m64" to sage_fortran options, link x86_64 libgfortran.dylib == iml-1.0.1.p8 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CPPFLAGS="-O2 -g -m64 "; export CPPFLAGS fi }}} == linbox-20070915.p3 == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS CPPFLAGS="-O2 -g -m64 "; export CPPFLAGS fi }}} == f2c-20070816 == uncomment "CFLAGS = -O" in f2c/makefile uncomment "CFLAGS = -O -fPIC" in libf2c/makefile {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 " else CFLAGS="-fPIC" fi }}} Dual architecture static lib is created, but f2c works == mpfi == {{{ if [ `uname` = "Darwin" -a "$SAGE64" = "yes" ]; then echo "64 bit MacIntel" CFLAGS="-O2 -g -m64 "; export CFLAGS CXXFLAGS="-O2 -g -m64 "; export CXXFLAGS CPPFLAGS="-O2 -g -m64 "; export CPPFLAGS fi }}} == quaddouble-2.2.p7 == {{{ CXXFLAGS='-fPIC -O3 -Dx86 -m64' export CXXFLAGS }}} == twisted-2.5.0.p8 == depends on pymactoolbox.h? {{{ gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -m64 -I/Users/mabshoff/sage-2.10.alpha2/local/include/python2.5 -c twisted/internet/cfsupport/cfsupport.c -o build/temp.macosx-10.3-i386-2.5/twisted/internet/cfsupport/cfsupport.o -w In file included from twisted/internet/cfsupport/cfsupport.c:8: /Users/mabshoff/sage-2.10.alpha2/local/include/python2.5/pymactoolbox.h:138: error: syntax error before ‘Track’ /Users/mabshoff/sage-2.10.alpha2/local/include/python2.5/pymactoolbox.h:140: error: syntax error before ‘Movie’ /Users/mabshoff/sage-2.10.alpha2/local/include/python2.5/pymactoolbox.h:142: error: syntax error before ‘MovieController’ /Users/mabshoff/sage-2.10.alpha2/local/include/python2.5/pymactoolbox.h:146: error: syntax error before ‘UserData’ /Users/mabshoff/sage-2.10.alpha2/local/include/python2.5/pymactoolbox.h:148: error: syntax error before ‘Media’ error: command 'gcc' failed with exit status 1 Error: Subprocess exited with result 1 for project core Error installing Twisted networking framework real 0m5.832s user 0m1.288s sys 0m0.744s sage: An error occurred while installing twisted-2.5.0.p8 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /Users/mabshoff/sage-2.10.alpha2/install.log. Describe your computer, operating system, etc. If you want to try to fix the problem, yourself *don't* just cd to /Users/mabshoff/sage-2.10.alpha2/spkg/build/twisted-2.5.0.p8 and type 'make'. Instead type "/Users/mabshoff/sage-2.10.alpha2/sage -sh" in order to set all environment variables correctly, then cd to /Users/mabshoff/sage-2.10.alpha2/spkg/build/twisted-2.5.0.p8 (When you are done debugging, you can type "exit" to leave the subshell.) make[1]: *** [installed/twisted-2.5.0.p8] Error 1 }}} == singular-3-0-4-1-20071209.p3 == {{{ CXXFLAGS="$CXXFLAGS -fPIC -O3 -g -m64"; export CXXFLAGS CFLAGS="$CFLAGS -fPIC -O3 -g -m64"; export CFLAGS CPPFLAGS="$CXXFLAGS -fPIC -O3 -g -m64"; export CPPFLAGS }}} == symmetrica-2.0 == Add -m64 in patches/makefile in three places == polybori == {{{ 64 bit MacIntel Starting build... Running build_polybori... scons: Reading SConscript files ... KeyError: 'PYTHONHOME': File "/Users/mabshoff/sage-2.10.alpha2/spkg/standard/polybori-0.1-r6/src/PolyBoRi-0.1/SConstruct", line 105: env=Environment(ENV = {'PATH': os.environ['PATH']}, options=opts,tools = tools, toolpath = '.') File "/Users/mabshoff/sage-2.10.alpha2/local/lib/scons-0.97/SCons/Environment.py", line 779: options.Update(self) File "/Users/mabshoff/sage-2.10.alpha2/local/lib/scons-0.97/SCons/Options/__init__.py", line 145: execfile(filename, values) File "custom.py", line 13: PYPREFIX=os.environ['PYTHONHOME'] File "/Users/mabshoff/sage-2.10.alpha2/local/lib/python2.5/UserDict.py", line 22: raise KeyError(key) Error building PolyBoRi. }}} == sagelib== sage -b: devel/sage/c_lib/SConstruct {{{ ## We want the debug and optimization flags, since debug symbols are so useful, etc. env.Append( CFLAGS="-O2 -g -m64" ) env.Append( CXXFLAGS="-O2 -g -m64" ) }}} == libm4fri == {{{ CFLAGS="$CFLAGS -fPIC $INCLUDES -L$SAGE_LOCAL/lib -m64" CXXFLAGS="$CXXFLAGS -fPIC $INCLUDES -L$SAGE_LOCAL/lib -m64" CPPFLAGS="$INCLUDES -m64" }}} ##################################################################### == numpy, scipy & friends == With Python 2.5.2. compiler with {{{--with-gcc="gcc -m64"}}} numpy builds fine. More investigation is needed here. == Done (incomplete list) == * givaro-3.2.6.p10 * gsl-1.10 * libfplll * mpfr-2.3.0.p0 * ntl-5.4.2 |
