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← Revision 11 as of 2020-02-08 13:26:23 ⇥
Size: 2898
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| Deletions are marked like this. | Additions are marked like this. |
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| goto [:interact:interact main page] | goto [[interact|interact main page]] |
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| [[TableOfContents]] | <<TableOfContents>> |
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| == Web app: protein browser == | == Web app: protein browser FIXME == |
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| {{{ import urllib2 as U |
[sagecell-issues] {{{#!sagecell from six.moves.urllib.request import urlopen |
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| f = U.urlopen(gen_str + GenBank_ID) g = f.read() f.close() |
with urlopen(gen_str + GenBank_ID) as f: g = f.read() |
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| attachment:biobrowse.png | {{attachment:biobrowse.png}} |
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| {{{ | [sagecell-issues] {{{#!sagecell |
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| print 'Population size: ' + str(pop_size) print 'Selection coefficient for first taxon: ' + str(d_field(selection)) |
print('Population size: ' + str(pop_size)) print('Selection coefficient for first taxon: ' + str(d_field(selection))) |
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| print 'Generations until coalescence: ' + str(len(gens)) show(coal_plot(coal_data1), axes = False, figsize = [8,4.0*len(gens)/pop_size], ymax = len(gens)-1) |
print('Generations until coalescence: ' + str(len(gens))) show(coal_plot(coal_data1), axes = False, figsize = [8, 4.0*len(gens)/pop_size], ymax = len(gens)-1) |
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| attachment:coalescent.png | {{attachment:coalescent.png}} |
Sage Interactions - Bioinformatics
goto interact main page
Web app: protein browser FIXME
by Marshall Hampton (tested by William Stein) [sagecell-issues]
Coalescent simulator
by Marshall Hampton [sagecell-issues]
