Databases

[:days4/projects/: Other SAGE Days 4 Projects]

Robert Miller, Emily Kirkman, Tom Boothby, David Joyner, Yi Qiang

GOAL: SAGE Enhancement Proposal.

• Unresolved issues:
  • require primary key to be the same in each table? else, how to join?
  • lists as entries: this is feasible via Emily's rawking regexp skills, IF we can find a delimiter guaranteed not to be in pickle strings (or pickled cucumbers, whichever comes first)
• Database class
  • instance field
    • filename -- the database itself
    • connection -- a pysqlite connection to 'filename'
    • query -- this would be the following two objects:
      • a string representing the 'where clause'.

      • a dict representing what data to return (default everything),  {'table1':['col1', 'col2'], 'table2':['col9'] } 

      • allows for recursive searching quickly, since we can simply modify the string, and wait until we have to execute the query
      • recursive searching is strictly an 'intersection'-- both of data returned (design decision) and of where clauses (definition of recursive search)
    • dict of tables -- keyed by table name, entries are
      • dict of columns -- keyed by column name, keeps track of indices, primary key state
    • mutable -- boolean
  • functions
    • init

      • A = Database() creates a new (obviously mutable) temp database and opens a connection to it

      • B = Database() creates a new (different) temp database and opens a connection to it

      • C = Database('existing.db') opens a connection to 'existing.db'

      • X = Database('special.db') where 'special.db' is one of the databases included in sage, which will usually be treated as immutable

        • border case, not likely to happen, but what SHOULD happen
        • issue warning/error
        • create mutable Database instance
          • "Because hey, if you want to rm -rf your own hard drive, go for it!" (R. Miller)
        • create immutable Database instance
          • public notebook, BAD
          • avoidable with chroot jails?
          • is this even an issue?
          • can't someone mess with this via other methods?
    • (mut'ble only) create/drop table
    • (mut'ble only) create/drop column( column name, col type, table, bool index=False, bool primary key=False )
      • if no table specified, raise an error and educate user about sql
    • (mut'ble only) create/drop index( column, table(s) )
    • (mut'ble only) create/drop primary key( column, table )
      • QUESTION: should we allow multiple tables? bounce this off someone who knows (i.e. is it possible to do this with sqlite?)
    • (mut'ble only) create/drop row( table, dict )
      • create accepts a dictionary keyed by column name

        • def foo(table=None, **kwds):
              if table is None:
                  raise KeyError('Table must be specified')
              print kwds
          
          sage: foo(table='table_name', shit='poo', dog='cat')
          # works
          sage: foo(shit='poo', dog='cat')
          Exception (click to the left for traceback):
          ...
          KeyError: 'Table must be specified'

    • (mut'ble only) add data from whatever (e.g. quickly via sql file): magic function to deal with other ways to add data? think about this more later.
    • set_mutable
    • copy

      • since it is [http://www.mail-archive.com/sqlite-users@sqlite.org/msg24725.html possible] to have two connections to the same db file, whether to create a new db may be a good option

        • pros? cons?
      • mutable by default
      • skeleton option will create a new mutable database with empty tables but the same column/index/primary key structure
      • preserves the query string?
      • executes the query string first?
    • save

      •  D.save('my.db')  should copy the class's database file to my.db.

      • this should not execute queries at all
      • option to close connection with old file and connect to new file, but default behavior shouldn't do this. motivation:

        • D = Database()
          D.add_stupid_fucking_shit()...
          D.save('really big file')
          D.remove_shit()
          D.add_useful_data()...
          D.save('even bigger file')

    • print
      • should probably just print a string with database name, number of tables...?
    • show
      • for extensions to the Database class, this can be anything, e.g. graph database prints nice table

      • for default database class, execute any queries and print the data- this isn't that much of an issue since everything will be int, real, bool or string...

      • notebook will print a nice html table
      • for command line, output returned by sqlite is a pretty good template
    • fn to update query data (see under instance field)
      • inplace option
      • how to do a join?
    • vacuum
    • clear queries

• ImmutableDatabase class

  • idea - a different class for databases that are included with sage, to avoid issues relating to stupid people accidentally fucking up an important database in a public setting (if possible)
  • god damn cheeky -- have database class extend immutable database! although a database won't technically be an immutable database to a person, it is a good way to do this, since we can add on the property 'mutable', as well as all the modification functions

• Online databases
  • cgi web-accessible...
  • accessible from SAGE, perhaps hosted at sage.math...
  • SQLite servers?
• Automagic caching: keep track of computation results
  • keeping those results in portable objects, making these objects merge-able, etc...

• Licensing: ∃ DBGPL?

• Noticing identical database entries

• SAGE [http://www.initd.org/pub/software/pysqlite/doc/usage-guide.html interface] to sqlite [:sqlite-tutorial: creating your own database using sqlite in sage]