Differences between revisions 32 and 33
 ⇤ ← Revision 32 as of 2015-02-12 17:00:30 → Size: 13134 Editor: Stefan Comment: ← Revision 33 as of 2015-02-13 00:44:17 → ⇥ Size: 16341 Editor: was Comment: Deletions are marked like this. Additions are marked like this. Line 29: Line 29: William Stein: I don't get the point of this as a real project. Who proposed this? For example, regarding "one needs to save the Python state after each cell", I don't think that is even possible. Another relevant remark is that right now IPython records the order in which cells are evaluated with numbers. Line 55: Line 57: William Stein: This makes me pretty nervous: "The dispatch threshold must be static and decided at build time." This is basically what ATLAS (automatically tuned linera algebra software does). There's so many ways in which this can go wrong, and it can be extremely time consuming figure out what good thresholds are. To do this project, the student could (1) identify numerous specific cases of code in the Sage library that have thresholds hard-coded (or otherwise) right now, then (2) try to abstract out something that would allow implementation of all those cases. One major difficulty is that the mathematics in (1) could be very deep and difficult for any one human to understand, so posting to mailing lists for feedback is important. Line 80: Line 84: == Wrap Functionality from PARI, e.g., Hermite Normal Forms for modules over the ring of integers of number fields. == == Hermite Normal Forms for modules over the ring of integers of number fields. == Line 86: Line 90: Pari has much new interesting functionality, e.g., for computing Hermite normal forms among other things. This project wouldinvolve making that functionality usable in Sage, with one application being to computation with modules over the ringof integers of a number field.Motivation: A Hermite Normal Form (HNF) algorithm for modules over general Dedekind domains was introduced inCohen's book 'Advanced topics in computational number theory'. The algorithm is currently not implemented in Sage, except inthe special case when the ring is a principal ideal domain.Much research projects in computational number A Hermite Normal Form (HNF) algorithm for modules over general Dedekind domains was introduced inCohen's book 'Advanced topics in computational number theory'. The algorithm is currently not implemented directly in Sage, except in the special case when the ring is a principal ideal domain.Much research in computational number Line 97: Line 97: quaternion algebras and associated Brandt modules over totally real fields. As a complete GSoC project, it would bereasonable to at least expose this HNF algorithm (from PARI) over the ring of integers of number fields, then use it. quaternion algebras and associated Brandt modules over totally real fields. As a GSoC project, it would bereasonable to at least expose this HNF algorithm (from PARI) over the ring of integers of number fields, then use it to implement basic functionality for working with finitely generated modules over Dedekind domains. Pari has much new interesting functionality, e.g., for computing Hermite normal forms among other things. This project would involve making that functionality usable in Sage, with one application being to computationwith modules over the ring of integers of a number field. NOTE: Whether to use the PARI functionality or write something new will depend on the student, the quality of whatis in PARI, etc. We did some tests of this functionality from PARI last summer at the Quaternion Algebras sage daysand the results were mixed. Magma has this functionality, and speed/quality comparisons with its implementationwould be critical to keep in mind. Line 115: Line 125: T.B.A. Create a personal GPL-licensed version of SageMathCloud (https://cloud.sagemath.com) that is included with every copy of Sage. The current source code of SageMathCloud is here: https://github.com/sagemath/cloudSageMathCloud (SMC) consists of:* BROWSER: a single page application that runs in the web browser, which implements sage worksheets, code editing, latex editing, todo lists, markdown editing, a terminal, etc.   * HTML/PROXY/SSL: a static html server (nginx), a proxy server (haproxy), and ssl encryption (stunnel)* DATABASE: a big distributed cassandra database* COMPUTE: compute virtual machines that run user code (sage worksheets, ipython notebooks, terminal sessions)* HUB: a node.js process the does authentication, talks with the database, and generally coordinates traffic between web browsers and compute virtual machines.The point of this project would be to make a single-project version of SMC for personal use that involves only the BROWSER and COMPUTE components listed above. The compute component would also serve html and have a small sqlite database to store images and other configuration information. The filesystem and files would just be the user's current account. In particular, this would involve completely cutting the HUB/PROXY/SSL and CASSANDRA components out of the picture. The benefit is that the sagews version of worksheets would be easily editable offline by anybody (not true now) and there would be a new offline latex editing tool. || Mentor || William Stein (and Harald Schilly) |||| Difficulty || Medium-Hard |||| Skills || CoffeeScript, Node.js, Python, SQLite; little mathematical knowledge is needed ||

# Project ideas for GSoC 2015

## Introduction

Google Summer of Code is a highly enjoyably and rewarding way to spend a summer.

Sage is a GPL open-source mathematical software system. It is designed to be not just a computer algebra system, but more like a complete environment for doing mathematics and related calculations. It is based on a vast collection of existing open-source software tools and libraries and ties them together via Python. Python is also the primary interface language for the user and its object-oriented way of expressing concepts is used to express calculations - of course, there are also many “normal” functions Behind the scenes, the Sage library executes the commands and calculations by its own algorithms or by accessing appropriate routines from the included software packages. On top of that, there are various ways how users can interact with Sage, most notably a dynamic web-site called “Notebook”.

All projects will start with an introduction phase to learn about Sage’s internal organization and to get used to its established development process. This is documented in the documentation for developers and all students will be instructed by the mentors on how to get their hands dirty. We use Git for revision control and trac for organizing development and code review. Our license is GPLv2+. Feel free to contact Mentors before you send us project proposals.

Feel free to introduce yourself and your project idea in our mailing list.

To get a better feeling how Sage works, please check out the developer guide.

Shoot Simon Spicer ([email protected]) an email if you want more details from a recent GSoC student on the actual logistics of doing a GSoC project.

## Notebook mode with execution from top to bottom

In the current notebook (both Sage notebook and IPython notebook) the cells can be executed in any order. From a teaching point of view this is terrible and from a scientific point of view this leads to highly non reproducible computations.

The purpose of this task is to have a new mode for the IPython notebook that would force computations from top to bottom. If a cell is executed, then the state in which it is executed must be the one you obtain by executing all the cells above it. In order to make it work, one needs to save the Python state after each cell.

Note: This is not completely Sage oriented... (see with IPython people)

 Mentor ... Difficulty ... Skills ...

William Stein: I don't get the point of this as a real project. Who proposed this? For example, regarding "one needs to save the Python state after each cell", I don't think that is even possible. Another relevant remark is that right now IPython records the order in which cells are evaluated with numbers.

## Native GUI

Adapt Spyder to work with Sage.

 Mentor ... Difficulty ... Skills ...

## Generic Dispatcher

In Sage there are various places where we can choose between several algorithms or underlying softwares to solve a problem. In Sage, this is often related to the presence of the keyword algorithm or method in methods and functions. The aim of this task is to build a generic dispatcher that would choose depending on the parameters the fastest solution available. The solution must be very light and not affect performance. The dispatch threshold must be static and decided at build time. This generic dispatcher could also be used to check coherency between the various implementations.

Note that it is different from what is called multimethods where the dispatch depends only on the input type. Here we consider a dispatcher that might also depend on the input values.

• (draft) timeline:
1. write a simple prototype of generic dispatcher
2. identify Sage functions/methods that could benefit from the dispatcher and test it
3. release a first candidate for the dispatcher
4. Sage integration
 Mentor ... Difficulty ... Skills good knowledge of Python and notions of Cython and C

William Stein: This makes me pretty nervous: "The dispatch threshold must be static and decided at build time." This is basically what ATLAS (automatically tuned linera algebra software does). There's so many ways in which this can go wrong, and it can be extremely time consuming figure out what good thresholds are. To do this project, the student could (1) identify numerous specific cases of code in the Sage library that have thresholds hard-coded (or otherwise) right now, then (2) try to abstract out something that would allow implementation of all those cases. One major difficulty is that the mathematics in (1) could be very deep and difficult for any one human to understand, so posting to mailing lists for feedback is important.

## Computation of q-expansions of modular forms attached to elliptic curves at all cusps.

 Mentor William Stein Difficulty Extreme Skills Good knowledge of Python, Sage, and research-level knowledge of number theory

There is a well-known and easy to implement algorithm to compute the q-expansions at all cusps of X_0(N) of the newform attached to an elliptic curve, when N is square-free, but no such algorithm is known explicitly in general. Being able to compute these q-expansions at all cusps in general has many very interesting applications, including determining the ramification of modular parametrizations of elliptic curves at cusps, and numerical computation of constants in the functional equation of the twists of a newform. A graduate student, Hao Chen (of University of Washington), has new ideas to carry out these computations. The project is to fully implement his algorithm, get it included in Sage, and also implement some of the interesting applications of the algorithm.

## Hermite Normal Forms for modules over the ring of integers of number fields.

 Mentor William Stein Difficulty Extreme Skills Good knowledge of Python, Sage, and graduate-level knowledge of abstract algebra and algebraic number theory

A Hermite Normal Form (HNF) algorithm for modules over general Dedekind domains was introduced in Cohen's book 'Advanced topics in computational number theory'. The algorithm is currently not implemented directly in Sage,

• except in the special case when the ring is a principal ideal domain.

Much research in computational number theory would benefit from an efficient implementation of this (very tricky and subtle) algorithm. For example, this algorithm is needed to get anywhere with quaternion algebras and associated Brandt modules over totally real fields. As a GSoC project, it would be reasonable to at least expose this HNF algorithm (from PARI) over the ring of integers of number fields, then use it to implement basic functionality for working with finitely generated modules over Dedekind domains.

Pari has much new interesting functionality, e.g., for computing Hermite normal forms among other things. This project would involve making that functionality usable in Sage, with one application being to computation with modules over the ring of integers of a number field.

NOTE: Whether to use the PARI functionality or write something new will depend on the student, the quality of what is in PARI, etc. We did some tests of this functionality from PARI last summer at the Quaternion Algebras sage days and the results were mixed. Magma has this functionality, and speed/quality comparisons with its implementation would be critical to keep in mind.

## Multivariate Asymptotic Expressions

 Mentor Daniel Krenn (backup: Clemens Heuberger) Difficulty Hard Skills good knowledge of Python and Sage; graduate-level knowledge of mathematics is useful

An asymptotic expression typically contains exact terms and O-terms (wikipedia: Big O notation ), for example, n3 + 2*n2 + O(n). In the multivariate setting this notion is extended to several variables, e.g., n2*t + n*t2 + O(n) + O(t). The basic framework for this asymptotic ring is currently under development (see trac meta ticket #17601). The main aim of this summer of code project is to extend its functionality to fully support the multivariate case. This includes the following parts:

1. Advanced operations with asymptotic expressions: As a first step in this project operations like exponentiation, taking powers and logarithms should be implemented. This happens on a high level using the existing addition and multiplication, and thereby, get to know the existing framework.

2. Implement mutlivariate growth groups: This would explore the full potential of the existing framework, which is already prepared for partially ordered growth groups. The conrete growth groups, in the case of lexicographic orders (e.g., terms with n*log(n)) as well as in the case of dependent variables (such as |t| <= n(1/2)), have to be written.

3. Interplay with existing Sage-Objects ("User-Interface"): In order to comfortably create asymptotic expressions, a conversion from, for example (but not limited to), Sage's symbolic ring to the asymptotic ring should be established.

## SageMathCloud

Create a personal GPL-licensed version of SageMathCloud (https://cloud.sagemath.com) that is included with every copy of Sage. The current source code of SageMathCloud is here: https://github.com/sagemath/cloud SageMathCloud (SMC) consists of:

* BROWSER: a single page application that runs in the web browser, which implements sage worksheets, code editing, latex editing, todo lists, markdown editing, a terminal, etc.

* HTML/PROXY/SSL: a static html server (nginx), a proxy server (haproxy), and ssl encryption (stunnel)

* DATABASE: a big distributed cassandra database

* COMPUTE: compute virtual machines that run user code (sage worksheets, ipython notebooks, terminal sessions)

* HUB: a node.js process the does authentication, talks with the database, and generally coordinates traffic between web browsers and compute virtual machines.

The point of this project would be to make a single-project version of SMC for personal use that involves only the BROWSER and COMPUTE components listed above. The compute component would also serve html and have a small sqlite database to store images and other configuration information. The filesystem and files would just be the user's current account. In particular, this would involve completely cutting the HUB/PROXY/SSL and CASSANDRA components out of the picture. The benefit is that the sagews version of worksheets would be easily editable offline by anybody (not true now) and there would be a new offline latex editing tool.

 Mentor William Stein (and Harald Schilly) Difficulty Medium-Hard Skills CoffeeScript, Node.js, Python, SQLite; little mathematical knowledge is needed

## Extending Game Theory in Sage

 Mentor Vincent Knight Difficulty Medium Skills Good knowledge of Python, Sage, and some knowledge of Game Theory would be advantageous

Recent contributions to Sage have developed Game Theoretic tools. The main aim of this summer of code project is to extend this functionality. This includes the following potential directions:

1. Further integration with gambit: One implementation of the solution of normal form games is done through the gambit python api. This currently implements a single two player algorithm, work would be undertaken to expand this to the various algorithms available in gambit (multiple players etc...).

2. Tests for degeneracy of normal form games: A degenerate game is a game where the Nash equilibria does not correspond to an isolated point of the strategy space. This work would involve researching, designing annd implementing algorithms to tests for degeneracy of normal form games.

3. Designing of educational materials making use of SageMathCloud: Having Sage and solution concepts for games readily available to all in SageMathCloud make this an excellent teaching tool. A variety of teaching materials could be designed making use of screencasts, interacts and other web technologies. Furthermore, this could also involve the enhancement of the game theoretic library in Sage to include example games.

## Add support for systems of rational inequalities

Enable Sage users to solve systems of rational inequalities like

`abs(2*x-3)/(3*x)>(x+1)/(x-2) and (4*x+5)^2/(x-3)<x+3.`

For this, the way to go seems to package QEPCAD in such a quality that it can become an "optional package". One could then use:

```sage: maxima_calculus("domain: real") #14229
sage: dnf1 = solve(abs(2*x-3)/(3*x)>(x+1)/(x-2),x)
sage: dnf2 = solve((4*x+5)^2/(x-3)<x+3,x)

to get the solution "0 < x < 2".

A further topic would be to introduce shorter syntax (infix boolean operators, inequality chains) for the above, to do something like the following:

```sage: dnf1 _and_ dnf2
0 < x < 2```

Note that 0 < x < 2 would not be a string here, but a Sage object. Also, dnf1 and dnf2 should be in the new syntax, instead of the current "list of lists" DNF.

Finally, also the something like the following should work:

```sage: solve(0 < x < 2 _or_ x > 1, x)
x > 0```

Motivation: Rational inequalities are a topic of our institute's 1st year classes, and Mathematica is currently used there.

(I cannot really offer to be a mentor here, because I did not do any Sage development yet --jondo)

 Mentor ... Difficulty ... Skills C programming, Sage packaging, cross platform testing

## Extending Matroid Theory functionality

 Mentor Stefan van Zwam; co-mentor: Michael Welsh Difficulty Medium Skills Good knowledge of Python, Sage, and some knowledge of Matroid Theory would be advantageous

The basic code for dealing with matroids in Sage is fairly mature, but many enhancements are still desirable. Among those:

1. Connectivity algorithms: Implement efficient tests for the connectivity of a matroid. In particular the (r(M))^2 |E| algorithm for 3-connectivity by Bixby and Cunningham (1979), and generic algorithms based on either Tutte's Linking Theorem or Matroid Intersection.

2. An improved catalog: This could be a warm-up task for the first two weeks. Enhance the matroid catalog with some options, such as adding options to prescribe the field of a representation.

3. Automorphisms and certificates: Many matroid test methods are currently True/False. In many cases, it makes sense to return a certificate of the claim, such as an isomorphism in case two matroids are determined to be isomorphic.

4. Representability tests: Test if a given abstract matroid is binary, ternary, quaternary, regular, ...

5. Framework for classes of representable matroids: This can take two directions. First, a parent-like class such as BinaryMatroids, which symbolically represents all binary matroids, and has methods for extending, membership tests, etc. Second, a finite collection of matroids (such as all binary matroids without a P7-minor up to 9 elements), where each matroid stores information about its allowed extensions and coextensions for faster generation and membership testing.

GSoC/2015 (last edited 2015-03-16 20:44:44 by schilly)