Differences between revisions 8 and 9

This page is intended for users. Developers, see Trac.

Possibly more clear lists of spkg's are on http://files.sagemath.org/spkg/.

Trac (the wiki) provides minimal information in regards to "dependencies" (upstream).

The Sage Developer Guide includes some information on including packages into the source code.

SPKGs

Update this table based on https://git.sagemath.org/sage.git/tree/build/pkgs.

Spkg	Upstream Weblink	Includes a spkg-src? (NY = updates manually)	Purpose	Standard?
4ti2	http://www.4ti2.de/	NY	A software package for algebraic, geometric, combinatoric problems on linear spaces	Optional
alabaster	http://alabaster.readthedocs.io/	NY	Default theme for Sphinx	Standard
appnope	https://github.com/minrk/appnope	NY	Disables App Nap on OSX 10.9	Standard
arb	https://arblib.org/ http://github.com/fredrik-johansson/arb/	NY	C library for arbitrary-precision interval arithmetic	Standard
atlas	http://math-atlas.sourceforge.net/	(AUTO UPDATES PER INSTALL)	Linear Algebra (packages)	Optional
autotools	https://www.gnu.org/software/automake/	(AUTO UPDATES PER INSTALL)	GNU Build System	Optional
babel	http://babel.pocoo.org/	NY	Internationalization utilities	Standard
backports_abc	https://pypi.python.org/pypi/backports_abc	NY	Backports "collections.abc" (PyPi)	Standard
backports_shutil_get_terminal_size	PyPi	NY	A backport of the get_terminal_size function from Python 3.3's shutil.	Standard
backports_ssl_match_hostname	PyPi	NY	The ssl.match_hostname() function from Python 3.5	Standard
beautifulsoup	https://www.crummy.com/software/BeautifulSoup/	?	Screen-scraping library (sits atop html/xml parser)	"pip"
benzene	? Assuming http://www.grinvin.org/	NY	Efficient generation of all nonisomorphic fusenes and benzenoids	Optional
biopython	http://biopython.org/	?	Python tools for computational molecular biology	"pip"
bliss	http://www.tcs.tkk.fi/Software/bliss	(AUTO UPDATES)	Computing automorphism groups and canonical forms of graphs	Optional
boost	http://www.boost.org/	NY	"Portable C++ Libraries"	Optional
boost_cropped	Same as above	includes spkg-src	?	Standard
brial	https://github.com/BRiAl/BRiAl	NY	Various; successor to PolyBoRi	Standard
brian	https://pypi.python.org/pypi/brian http://briansimulator.org/	?	A clock-driven simulator for spiking neural networks	"pip"
buckygen	http://caagt.ugent.be/buckygen/	NY	Efficient generation of all nonisomorphic fullerenes	Optional
bzip2	http://www.bzip.org/	(AUTO UPDATES)	Data compressor	Standard
cbc	https://projects.coin-or.org/Cbc	NY	Open-source mixed integer programming solver written in C++	Optional
ccache	https://ccache.samba.org/	NY	Compiler cache; supports C, C++, Objective-C, and Objective-C++	Optional
cddlib	https://www.inf.ethz.ch/personal/fukudak/cdd_home/	(AUTO UPDATES)	C implementation of the Double Description Method of Motzkin	Standard
cephes	http://www.moshier.net/	NY	Mathematical library in/for C	Standard
certifi	http://certifi.io/	NY	Python package for providing Mozilla's CA Bundle	Standard
cliquier	https://users.aalto.fi/~pat/cliquer.html	(AUTO UPDATES)	Set of C routines for finding cliques in an arbitrary weighted graph	Standard
cmake	https://cmake.org/	NY	CMake is a cross-platform build system generator	Experimental
combinatoral_designs	?	NY	Data for combinatoral designs	Standard
compilerwrapper	https://bitbucket.org/vbraun/compilerwrapper	NY	A wrapper for compiler and binutils	Experimental
configparser	https://docs.python.org/3/library/configparser.html	NY	Exists for compatiblity with Python2	Standard
configure	Auto-generated by Sage	Auto-generated by Sage	shipped in case sufficiently recent autotools not installed	Base
conway_polynomials	extends Sage library	NY?	Small database of Conway Polynomials	Standard
coxeter3	http://math.univ-lyon1.fr/~ducloux/coxeter/coxeter3/english/coxeter3_e.html	NY	Wraps Fokko Ducloux's Coxeter 3 C++ library	Optional
cryptominisat	https://www.msoos.org/	NY	(To be) an efficient sequential, parallel and distributed solver	Experimental
csdp	https://projects.coin-or.org/Csdp	(AUTO UPDATES)	A fast SDP solver written in C	Optional
cvxopt	http://cvxopt.org/	NY	Convex optimization based on Python	Standard
cycler	http://matplotlib.org/cycler/	NY	A small break of of matplotlib to deal with "composable cycles"	Standard
cysignals	https://github.com/sagemath/cysignals	NY	Interrupt and signal handling for Cython	Standard
cython	http://cython.org/	NY	C extensions for Python	Standard
d3js	https://d3js.org/	(AUTO UPDATES)	JavaScript library for manipulating documents based on data	Optional
database_cremona_ellcurve	https://github.com/JohnCremona/ecdata	NY	John Cremona's database of elliptic curves	Optional
database_gap	https://www.gap-system.org/	(AUTO UPDATE)	The databases of GAP: finite groups and tables of marks	Optional
database_kohel
database_mutation_class
database_odlyzko_zeta
database_pari
database_stein_watkins
database_stein_watkins_mini
database_symbolic_data
dateutil	https://pypi.python.org/pypi/python-dateutil	NY	Extensions to Python dateutil	Standard
decorator	?	NY	"Better living through Python with decorators"	Standard
docutils	http://docutils.sourceforge.net/	NY	A modular system for processing documentation into useful formats, such as HTML, XML, and LaTeX.	Standard
doc2tex	https://pypi.python.org/pypi/dot2tex	NY	A Graphviz to LaTeX converter	Optional
ecl	https://common-lisp.net/project/ecl/	(AUTO UPDATES)	Implementation of the Common Lisp language	Standard
eclib	https://github.com/JohnCremona/eclib	NY	Enumerating and computing with elliptic curves defined over the rational numbers	Standard
ecm	http://gforge.inria.fr/projects/ecm/	NY	Elliptic Curve Method for Integer Factorization	Standard
elliptic_curves		NY	Two databases for elliptic curves, from John Cremona and William Stein	Standard
entrypoints	https://github.com/takluyver/entrypoints	NY, but also has special setup	Discover and load entry points from installed packages	Standard
fflas_ffpak	http://www.linalg.org/linbox/fflas-ffpack/	NY	Source code library for dense linear algebra over word-size finite fields	Standard
flask	http://flask.pocoo.org/	NY	Web micro-framework	Standard
flask_autoindex	?	NY	The mod_autoindex for Flask	Standard
flask_babel	?	NY	Adds i18n/l10n support to Flask applications	Standard
flask_oldsessions	?	NY	Provides a session class	Standard
flask_openid	?	NY	OpenID support for Flask	Standard
flask_silk	?	NY	Adds silk icons to your Flask application or blueprint, or extension	Standard
flint	http://www.flintlib.org/	NY	Fast Library for Number Theory	Standard
flintqs	http://www.friedspace.com/QS/	NY	Multi-polynomial quadratic sieve for integer factorization	Standard
fyplll	https://github.com/fplll/fpylll	NY	Python interface for fpll (Lattice algorithms using floating-point arithmetic)	Standard
freetype	https://www.freetype.org/	NY	Software library to render fonts	Standard
fricas	https://fricas.sourceforge.net/	NY	Advanced CAS	Experimental
frobby	http://www.broune.com/frobby/	NY	Provides a number of computations on monomial ideals	Optional
functools32	https://pypi.python.org/pypi/functools32	NY	Backport of the functools module from Python 3.2.3	Standard
future	https://pypi.python.org/pypi/future/	NY	future is the missing compatibility layer between Python 2 and Python 3	Standard

Spkg	Current spkg Maintainer(s)	Version in Sage	Latest Stable Release	Removed In
pysqlite
ipython1				Sage 3.3

What is a spkg?

Files with the extension ".spkg" are known as Sage packages. The directory SAGE_ROOT/spkg/standard contains the standard SPKG's. In a source install of Sage, this directory contains all the standard Sage spkg files (actually .tar or .tar.bz2 files), which are the source code that defines Sage. In a binary install, some of these may be small placeholder files to save space.

Sage packages are distributed as ".spkg" files, which are .tar.bz2 files (or tar files) but have the extension ".spkg" to discourage confusion. Although Sage packages are packed using tar and/or bzip2, please note that ".spkg" files contain control information (installation scripts and metadata) that are necessary for building and installing them. For source distributions, when you compile Sage the file SAGE_ROOT/makefile takes care of the unpacking, compilation, and installation of Sage packages for you. For more information on the structure of .spkg files, please refer to the Sage Developer's Guide in your local installation of Sage at

SAGE_ROOT/sage/doc/output/html/en/developer/index.html

If you cannot locate that file in your local installation of Sage, you might want to consider (re)building the standard Sage documentation using this command:

SAGE_ROOT/sage -docbuild all html

or refer to the online Sage developer's guide. Additional Sage packages can be found at the packages download page.

-  ⇤ ← Revision 8 as of 2017-02-22 17:29:53 → 
  Size: 10671
  Editor: mrennekamp
  Comment: add through end of f's
+   ← Revision 9 as of 2017-09-13 13:13:15 → ⇥
  Size: 10705
  Editor: mderickx
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 5:
-[[https://trac.sagemath.org/|Trac]] (the wiki) provides minimal information in regards to "dependencies" (upstream).
+[[https://trac.sagemath.org/wiki/WikiStart#Upstreambugtrackers|Trac]] (the wiki) provides minimal information in regards to "dependencies" (upstream).

Diff for "spkg"

SPKGs

What is a spkg?